Protons: Protonation states and tautomers for OpenMM
****************************************************

.. caution::

    This is module is undergoing heavy development. None of the API calls are final.
    This software is provided without any guarantees of correctness, you will likely encounter bugs.

    If you are interested in this code, please wait for the official release to use it.
    In the mean time, to stay informed of development progress you are encouraged to:

    * Follow `this feed`_ for updates on releases.
    * Check out the `github repository`_ .

.. _this feed: https://github.com/choderalab/constph-openmm/releases.atom
.. _github repository: https://github.com/choderalab/constph-openmm

Table of contents
=================

.. toctree::
   :name: mastertoc
   :maxdepth: 2
   :numbered:


   modules/introduction
   modules/roadmap
   modules/installation
   modules/system preparation
   modules/simulation instructions
   modules/calibration
   modules/ligutils
   api
   modules/references


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`